rs30498587 SNP Detail

Summary

• ID
  rs30498587
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:110489317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAAAAC ATTCAACAAA
  AATTCATTAG ATAGATTTAG AAATAGTAAA TTTATTAGTT TTTTTTTTAA AAGAAAAAAA
  TCTACTTGAC AAACTGCAAG ATTCATGTCT TTTTCAATTA ACCAGACTTT TAGTTCCACA
  TACGATGTCT TTGGATCTAA AAGTATTACT AGGCACCACT TCATTGCTGT TTAACTGCAA
  M
  TGAAGAATCC TCGTATTACA TTAGTAGTAA AATGCACAGC AAACCTTCAT ATCTTCAAAT
  GCTCAAAAAC AAAAACAAAA ACAAAACAGG CAGCAAGGTC TATAAAAGGA AGTGTAGGTT
  TGAAATGAGG GAGGCTGGAA GAAATGACCT GAGGCAGGCT TGAGAGGCAG CCAAGTCACA
  CCGTGGAGGA GCAGAGACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49142713	NES12472313	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	C	A	A		C	C	A	C
ss324525189	CHEV_13_111142991	CHEVERUD	SCREENING_POP	f	SNP									A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30498587					SNP	A	A	A	A	C	C	A	A	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49142713	NES12472313	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:110489317 () rs orientation: forward

Symbol	Name	Function Class
Gapt	Grb2-binding adaptor, transmembrane	within coordinates
Rr486020	regulatory region 486020	1393 bp distal