rs30499216 SNP Detail

Summary

• ID
  rs30499216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37459705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCG AAATGAGGAA GTTGGAAAGT
  Y
  CTTATCTTTA AAGGAAGGCT GACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46225074	mCV24565091	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss47454310	NES11497066	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	C	C	C		C	C	C		C
ss144483895	ENSMUSSNP1689297	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss322602146	CHEV_8_38055605	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30499216					SNP	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47454310	NES11497066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37459705 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	1053 bp upstream
Cpgi20273	CpG island 20273	975 bp proximal
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	within coordinates
Tssr76927	transcription start site region 76927	1000 bp upstream