rs30499223 SNP Detail

Summary

• ID
  rs30499223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37460208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGGGTAA GGGCTTGAGT
  TTGAAATTAA ATAGGAGGAT ACTTAGACTT TCTTAAAGTG GAATTACTCA TGTCACAAAA
  CCCACTGTCC CTTTGTAAGT GGTATTAAGC ACACTAACAG ATTTCTTGAG CAGGCTGCAT
  CTTTAGGCTT TATCCTCAGA GACTCAGATA TACAGAATGC AGGAAATGCA CCCGAACCCT
  Y
  CGTGTAAAGC ATCTTGTAGG TGGTAATAGC CATACAGCAC AACATCTAGA GATGAAGGTA
  TGGATCTGGC AGTTGGAAGG GACAGCACCT AACACTGTGG TTTTGAGGAA TCTGCGAGGG
  TTTTCAGGAG CCTTGAGAGA CTGTGGAGAG ACCTTAGAGA ATATTGTGAG TATTTCCATT
  TTTATTCTAA GGCAAATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47454319	NES11497069	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30499223					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47454319	NES11497069	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37460208 () rs orientation: forward

Symbol	Name	Function Class
AI429214	expressed sequence AI429214	550 bp upstream
Cpgi20273	CpG island 20273	472 bp proximal
G630064G18Rik	RIKEN cDNA G630064G18 gene	within coordinates
Gm63701	predicted gene, 63701	within coordinates
Rr662471	regulatory region 662471	within coordinates
Rr662472	regulatory region 662472	470 bp proximal
Tssr76927	transcription start site region 76927	497 bp upstream