rs30499604 SNP Detail

Summary

• ID
  rs30499604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107375231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGACTGCC TGGTATGTGT
  TTAGGTCTGT ACAAAGCAGG ACTTCTCATG AGAAATGACC CGGGGCCCTC CTCCCCTAGC
  TCCCCATAGT TCAGACCTAA GAAGAGGGAC TCAGAGGTGT ACAGAGTCAG GTGTATTACA
  GCCTGCGTGA TCTCACTTCT CTTTTCACAG TGGGCATACT CTAGTTGAGG GAAGGGTAAT
  R
  TAGTGGTAAG GAAGGGAAGA AGAGCAGTCC CTGCCTGGGA ATACTGCAGA TCTGCACGGG
  GATTGGCTCA TAGCCTCAGG GCTCACACAC GAGCACGGCC TCTGGAGGAC GTCTCCTGGC
  ACTTAAAAAG CAGCAGCCAG CTCCTGACGA TGTATTGCTT GATGGCAGAA GCCAACCCTA
  TCTATAATTC CTCTGCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45436096	mCV24919768	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss135584330	ENSMUSSNP3772617	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30499604					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107375231 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	1705 bp proximal
Rr582980	regulatory region 582980	963 bp distal
Rr582981	regulatory region 582981	1128 bp distal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates