rs30499775 SNP Detail

Summary

• ID
  rs30499775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9929582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC CTTTGGGGAT GAAAACGACC
  R
  ATGGTCTGGC GAAGGAGAAA GTGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45434318	mCV23605281	ABI	CRAMUS_MOUSE	f	SNP		A	G					A
ss60370074	NES15868303	PERLEGEN	MM_PANEL2	f	SNP	A			A	G	A	G	A	A	A		A	A	G
ss134577952	ENSMUSSNP3177742	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
ss320652244	CHEV_3_9864522	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30499775					SNP	A	A	G	A	G	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60370074	NES15868303	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9929582 () rs orientation: forward

Symbol	Name	Function Class
Gm56771	predicted gene, 56771	within coordinates
Rr367411	regulatory region 367411	1281 bp upstream
Rr573524	regulatory region 573524	1159 bp distal
Rr573525	regulatory region 573525	374 bp proximal