rs30500099 SNP Detail

Summary

• ID
  rs30500099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122361389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTGGTGAT TAAAAATCAT TGACACTTAA ATAAAAATAG
  AATCTAAGTT TTAAATATTC ACTTTAACAG GAAAACATAA AAACATAGCA AATATATGCA
  Y
  GAGCTTTCAA AATGCCAAAG ATTTGCATAG TATGAAGAAA CACCACAGTA TCTTGCATGA
  ACTTGTACAT TTTCAGTCTT CAAGCCTTTC TGACAAGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45436202	mCV22967128	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss51614423	NES14662936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		C	T	C	C		T	C	C	T		C
ss135744535	ENSMUSSNP1244074	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320912814	CHEV_3_122270658	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30500099					SNP	C	C	C	C	T	C	C	C	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51614423	NES14662936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122361389 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1l	formin binding protein 1-like	within coordinates
Gm43569	predicted gene 43569	within coordinates
Rr375679	regulatory region 375679	1598 bp downstream
Tssr31506	transcription start site region 31506	1001 bp downstream
Tssr35455	transcription start site region 35455	1045 bp downstream
Tssr35456	transcription start site region 35456	1970 bp downstream