rs30500155 SNP Detail

Summary

• ID
  rs30500155
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCTGCT AGGGTGAGTT TCACTGGAAG
  AATACACAGA ATGGACTCTA TTGGAGGAGC TCAAAGACAC CCAGTCAGAG TCAGGCAAAC
  AGGGCCTTCC AGGAAAAGGA ATGGAGCTTG AACCTTTCTG AGCCACCCCC TCCACTTTCT
  W
  CTTCTTTTCA AGTCCTGGAA GCAGAGAGCT AGCTCTTGGT GCATCTCGAA GTGGCTGTGT
  CCCCGTCCTT CTGTCTCTAC ACCCTTTCCT TCCCTCGCTT ATTTCCCCAT TTCGGGGTAT
  TCTGCATGAG CTCTGTGGAC TCCTATTTGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44935180	mCV23265302	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	T
ss145481816	ENSMUSSNP4386231	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
ss319975141	CHEV_1_133641029	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30500155					SNP	T	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672190 () rs orientation: forward

Symbol	Name	Function Class
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	423 bp downstream
Tssr8661	transcription start site region 8661	257 bp downstream