rs30501549 SNP Detail

Summary

• ID
  rs30501549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115924414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC TATCAGTGAG ACCCACAGTC
  R
  CCAACTGCTC CAACCTGGCA GGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45436024	mCV23276031	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss135669164	ENSMUSSNP3385629	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320894377	CHEV_3_115833683	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30501549					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115924414 () rs orientation: forward

Symbol	Name	Function Class
D3Mit215	DNA segment, Chr 3, Massachusetts Institute of Technology 215	164 bp distal
Gm43109	predicted gene 43109	within coordinates
Rr583657	regulatory region 583657	954 bp distal
Tssr35297	transcription start site region 35297	1378 bp upstream
Tssr35298	transcription start site region 35298	1301 bp upstream
Tssr35299	transcription start site region 35299	1141 bp upstream
Vcam1	vascular cell adhesion molecule 1	1077 bp upstream