rs30503747 SNP Detail

Summary

• ID
  rs30503747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58997938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTA ACCAAAACCA GAAAACATCT
  Y
  GAGAGGAGGC ATTTTATGTG ACAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss44935222	mCV24804572	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T
ss49400965	NES12799972	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T		T	T	T		C	T
ss149140949	ENSMUSSNP5804692	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss319738102	CHEV_1_59015623	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30503747					SNP	C	C	T	T	C	T	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400965	NES12799972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58997938 () rs orientation: forward

Symbol	Name	Function Class
Gm70797	predicted gene, 70797	680 bp upstream
Rr371350	regulatory region 371350	within coordinates
Rr411537	regulatory region 411537	533 bp distal
Trak2	trafficking protein, kinesin binding 2	within coordinates