rs30504080 SNP Detail

Summary

• ID
  rs30504080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142266011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG AGGGCAGGGG ACCCAGAAAA
  Y
  GCAATGACAA TCATTGATTA GTAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45437102	mCV23580123	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136014985	ENSMUSSNP5308922	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30504080					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142266011 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	within coordinates
Rr398085	regulatory region 398085	60 bp upstream
Rr586453	regulatory region 586453	within coordinates
Rr586454	regulatory region 586454	172 bp proximal
Rr586455	regulatory region 586455	579 bp proximal
Tssr32157	transcription start site region 32157	145 bp downstream
Tssr32158	transcription start site region 32158	116 bp downstream
Tssr32159	transcription start site region 32159	84 bp downstream
Tssr32160	transcription start site region 32160	36 bp downstream
Tssr32161	transcription start site region 32161	101 bp upstream
Tssr32162	transcription start site region 32162	288 bp upstream
Tssr32163	transcription start site region 32163	322 bp upstream
Tssr32164	transcription start site region 32164	355 bp upstream
Tssr32165	transcription start site region 32165	371 bp upstream
Tssr32166	transcription start site region 32166	707 bp upstream
Tssr32167	transcription start site region 32167	1434 bp upstream