rs30504307 SNP Detail

Summary

• ID
  rs30504307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143580095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGATAAAG GCTCCAAGTA AAGTCTGGGT
  AATAAATGCA TAGGTAGGTT TCATGGAGTT AAGAGAGTCA ACAATAGTTT TTATGAATTT
  TAATTCATAT ACAAATCATT TCCAACCAAT TTCTCTTTTT GATTAATTTA TGTTTTTAAG
  R
  TTAATGATCC TTAAACTCAA CGTTGTAAGA TACATGGTTA GTAATTTATA GTGTATAGCA
  GTTAAAGCAC GGAAGTTCTA CTTTGTTTTT GTTATATAAA TTCCCTTAAA TTGTCCCTCT
  CATGTTAAGT CAAGAAGGTC AAAATCTAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss44934147	mCV23583656	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss320010265	CHEV_1_145551487	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30504307					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143580095 () rs orientation: forward

Symbol	Name	Function Class
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component	1464 bp upstream
Cpgi835	CpG island 835	869 bp distal
Gm69373	predicted gene, 69373	828 bp upstream
Rr419927	regulatory region 419927	1906 bp distal
Rr419928	regulatory region 419928	974 bp distal
Rr419929	regulatory region 419929	1424 bp distal
Tssr14091	transcription start site region 14091	1560 bp upstream
Tssr14092	transcription start site region 14092	1528 bp upstream
Tssr14093	transcription start site region 14093	1510 bp upstream