rs30504313 SNP Detail

Summary

• ID
  rs30504313
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172333605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCCAGGGC CCAGGGCTAT TACCTGGCAG AGCAGGAGTT
  GGACTGGGCC AACTTTACCA AAGAAAAAGG ATAGCTGGTG GTTTTCCTGA GGGTGTGTGT
  K
  TGTGAGATCA AGGATGGGCC ATACTGCAGG TTGAGGTTGA AACAATGAAT TAAAGTTTGG
  ATGCCAGGCT TGCAGACCTA GCGACAGATA GAATGCTAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44934153	mCV24953254	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss120011646	PARCsnp_1.19901	PARC_SEQ	INBRED	f	SNP			G	T
ss120014579	PARCsnp_1.09948	PARC_SEQ	INBRED	f	SNP			G	T
ss146193940	ENSMUSSNP13562	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320125773	CHEV_1_174436169	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30504313					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172333605 () rs orientation: forward

Symbol	Name	Function Class
Rr29014	regulatory region 29014	1204 bp distal
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	738 bp downstream
Tssr10220	transcription start site region 10220	267 bp downstream
Tssr10221	transcription start site region 10221	232 bp downstream
Tssr10222	transcription start site region 10222	139 bp downstream
Tssr10223	transcription start site region 10223	188 bp upstream
Tssr10224	transcription start site region 10224	534 bp upstream
Tssr10225	transcription start site region 10225	573 bp upstream
Tssr10226	transcription start site region 10226	586 bp upstream
Tssr10227	transcription start site region 10227	627 bp upstream
Tssr10228	transcription start site region 10228	679 bp upstream
Tssr10229	transcription start site region 10229	729 bp upstream
Tssr10230	transcription start site region 10230	750 bp upstream
Tssr10231	transcription start site region 10231	813 bp upstream
Tssr10232	transcription start site region 10232	857 bp upstream
Tssr10233	transcription start site region 10233	888 bp upstream
Tssr10234	transcription start site region 10234	947 bp upstream
Tssr15226	transcription start site region 15226	814 bp downstream
Tssr15227	transcription start site region 15227	907 bp downstream