rs30504564 SNP Detail

Summary

• ID
  rs30504564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54598755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAGTGT AGGGTTAGTT
  GTGGTAGTCT GCACTAATCT CAGCTCTCAG GAGCCAGAGG TAGATCAATT TCTGCCGTTT
  TAAAAACCAA CCTGGTCTTT ATAACAAGTT TCAGGTCAGC CAGAGCAATA ATAATAACAA
  TAACAACAAC AGCAGCAGCC AGGACCTGTG CTGGAGCCTT GCTCTATCCT TATTGCAATG
  Y
  TAGCCCAGTC CAGGTGGTGC AAAGGTACAC TGTGAACCAT GAGCAAAATA GCCTAAGGGC
  CAGAAAAACA AAAACAAAAA CCAACCAAAA ACATGATCAT CAAATCCTTA CAGAATGAAA
  TCTGCATGTT TGCTGTGGTT TAATCTACCA TTGTGAAAGT CAGCCGACAT CTCCATTGCC
  AGCTACTCTG TCTAGGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955424	NES10811642	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30504564					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955424	NES10811642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54598755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1015 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	1228 bp upstream
Rr576827	regulatory region 576827	1955 bp distal
Rr576829	regulatory region 576829	695 bp proximal
Rr576830	regulatory region 576830	1289 bp proximal
Rr576831	regulatory region 576831	1782 bp proximal
Supt20	SPT20 SAGA complex component	1473 bp upstream
Tssr29131	transcription start site region 29131	1441 bp upstream
Tssr29132	transcription start site region 29132	1471 bp upstream
Tssr29133	transcription start site region 29133	1515 bp upstream
Tssr29134	transcription start site region 29134	1549 bp upstream
Tssr29135	transcription start site region 29135	1700 bp upstream
Tssr29136	transcription start site region 29136	1725 bp upstream
Tssr29137	transcription start site region 29137	1754 bp upstream