rs30504573 SNP Detail

Summary

• ID
  rs30504573
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54599812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACTGAG GTGGTTAAAA
  CAAAACTGAA TCGGTGTTGG GGGACAGATT GCCTGATAAA GACACTTGCG GCCAACCCTG
  ACTTTCTGAG CCTGAACCCC AGGATCGAGA AGAGGAAAAC GGAATCCCAC AAGTTGTCTG
  TCCTGTGACC TCCAAATGTG CCGCATGCAT ATATGCACGA AATAGGTGTA AAAGGGACTT
  M
  AGGACTTCGC CGGCTCCTGA CATACCACAA GCAAGCTTTA AGCTCTGCAC TCACTAACTT
  TGATAAAGAT GTTTCACAAA GTTTGGAAGT TCAACCGCTT CCAGCCCTAC GAAAGTTAAC
  GCTCATGCTC TCCCGCGCCA CGCAAACCGG CCGGACAACT TGCTCCAGCC TTCTGCGCAC
  ACCTAAAGCT ACTCTAAAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955436	NES10811497	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30504573					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955436	NES10811497	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54599812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	within coordinates
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	171 bp upstream
Rr576829	regulatory region 576829	within coordinates
Rr576830	regulatory region 576830	232 bp proximal
Rr576831	regulatory region 576831	725 bp proximal
Rr576832	regulatory region 576832	1734 bp proximal
Supt20	SPT20 SAGA complex component	416 bp upstream
Tssr29131	transcription start site region 29131	384 bp upstream
Tssr29132	transcription start site region 29132	414 bp upstream
Tssr29133	transcription start site region 29133	458 bp upstream
Tssr29134	transcription start site region 29134	492 bp upstream
Tssr29135	transcription start site region 29135	643 bp upstream
Tssr29136	transcription start site region 29136	668 bp upstream
Tssr29137	transcription start site region 29137	697 bp upstream