rs30505543 SNP Detail

Summary

• ID
  rs30505543
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34251215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC AACTTTTTCC TTTCTCTGCG
  W
  GTGCTGGGAT CTTGTGGGGA CTGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	MSM/Ms
ss45437615	mCV25347657	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss134764190	ENSMUSSNP7019301	ENSEMBL	ENSEMBL_Sanger	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	MSM/Ms
rs30505543					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34251215 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	128 bp distal
Rr575109	regulatory region 575109	within coordinates
Rr575110	regulatory region 575110	1231 bp proximal
Tssr28802	transcription start site region 28802	310 bp downstream
Tssr28803	transcription start site region 28803	276 bp downstream
Tssr28804	transcription start site region 28804	133 bp downstream