rs30505717 SNP Detail

Summary

• ID
  rs30505717
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54600473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTAGGT GAGTTCTGCG
  GCCGGAGGTG GTGGGTGACT TAGGTGGGCT GGCCGGCGGG CTAGCGGGTG TCGGTCTAGT
  GTCGTGGAGC GGCCGGGATC TGAAGTGACG GGAGGAGGTC GATCCGCGTT TCGGAGATTC
  CGGGGTTGGG CGGGCACCTC GGCGGCCATT CTGCGTGAAC GCCCCTCCGC ACTCCGCGGC
  S
  CCGCTCGCCT GCACTTTTGC TAATAGCTTG TTCTTTGGGC TCTGCTACAG GTATTTCTGG
  AAAATCGCTG CAAGGTTGGC AGAATGCTTC TTCAGGGCGG AGTGCGGTGT GACTGTTGAG
  TAGAGGTTGC TTCTCTGTGG AGTTGGCGTT CTGAGGGTAA AGCCTGGGTT AAAAAAAAAA
  AATCTGCAGT TGGGACCCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955440	NES10811499	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30505717					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955440	NES10811499	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54600473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	within coordinates
Gm65558	predicted gene, 65558	391 bp upstream
Rr397672	regulatory region 397672	190 bp downstream
Rr576829	regulatory region 576829	430 bp distal
Rr576830	regulatory region 576830	within coordinates
Rr576831	regulatory region 576831	64 bp proximal
Rr576832	regulatory region 576832	1073 bp proximal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	252 bp downstream
Tssr29132	transcription start site region 29132	216 bp downstream
Tssr29133	transcription start site region 29133	184 bp downstream
Tssr29134	transcription start site region 29134	160 bp downstream
Tssr29135	transcription start site region 29135	within coordinates
Tssr29136	transcription start site region 29136	7 bp upstream
Tssr29137	transcription start site region 29137	36 bp upstream