rs30505721 SNP Detail

Summary

• ID
  rs30505721
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54600782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTGTTG AGTAGAGGTT
  GCTTCTCTGT GGAGTTGGCG TTCTGAGGGT AAAGCCTGGG TTAAAAAAAA AAAATCTGCA
  GTTGGGACCC AAGTTCACCA GGGAAATTAG TTTAGCTGAT GTCTACTCTG GGAGCCATCT
  TTTATCGCCA TCAGAGTACC TAGTTAGGAC GCCAAGTGCA AAAGCGATGT GCATAGACTG
  K
  AGACAGATTA TGATTGATAT AAACTTAACA TCAAAATTAA GAAAAAAAAT AGGTGAGTGC
  TCTCATCAAG TCAGTTCGTA AGGCTTTGCT TAAGGAAAAA AAATGGGTGC AGGTTTGAGT
  AGGCTGAAGG TTGGAATAAT AGAACCTCAG GTTATAAATT GAGAAGGGAC AGAATGTGAT
  AAGACTGTGA TAATAGGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46955444	NES10811501	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30505721					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955444	NES10811501	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54600782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	174 bp distal
Gm65558	predicted gene, 65558	700 bp upstream
Rr397672	regulatory region 397672	499 bp downstream
Rr576829	regulatory region 576829	739 bp distal
Rr576830	regulatory region 576830	246 bp distal
Rr576831	regulatory region 576831	within coordinates
Rr576832	regulatory region 576832	764 bp proximal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	561 bp downstream
Tssr29132	transcription start site region 29132	525 bp downstream
Tssr29133	transcription start site region 29133	493 bp downstream
Tssr29134	transcription start site region 29134	469 bp downstream
Tssr29135	transcription start site region 29135	306 bp downstream
Tssr29136	transcription start site region 29136	282 bp downstream
Tssr29137	transcription start site region 29137	260 bp downstream