rs30505723 SNP Detail

Summary

• ID
  rs30505723
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54601125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCAGGT TATAAATTGA
  GAAGGGACAG AATGTGATAA GACTGTGATA ATAGGTGAGT CGTTTGCATT GAATTCTTTG
  TAAACTTGAG ATGTCAATAA GTTTATAATG GGTTCGTTTA TAATAGTTTC CACATGGGTT
  CTTGGTTCTT ATATGTACAA GCAGAGTATA AGAGATAACA CAAAGTTTGT TCTTTTACGC
  W
  ATAAAGTAGT ATAGTATCCC TTCTAATTTA GTAAAAAGTA ACTGTAATTT GAGTTACCAC
  ATTGGATTTG TGAGTCTTGT TATTTAGGTT TAGTGGTCAA AAAAAATCAC CTAAATTTTG
  CTTATACTTC CTCTAGTAAC TCAAAGACAG GAATAATATT CTTAAAAAGA TACGTTTTTT
  TTTGGGGGGG GGGTCTGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955446	NES10811502	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30505723					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955446	NES10811502	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54601125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	517 bp distal
Gm65558	predicted gene, 65558	1043 bp upstream
Rr397672	regulatory region 397672	842 bp downstream
Rr576829	regulatory region 576829	1082 bp distal
Rr576830	regulatory region 576830	589 bp distal
Rr576831	regulatory region 576831	129 bp distal
Rr576832	regulatory region 576832	421 bp proximal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	904 bp downstream
Tssr29132	transcription start site region 29132	868 bp downstream
Tssr29133	transcription start site region 29133	836 bp downstream
Tssr29134	transcription start site region 29134	812 bp downstream
Tssr29135	transcription start site region 29135	649 bp downstream
Tssr29136	transcription start site region 29136	625 bp downstream
Tssr29137	transcription start site region 29137	603 bp downstream