rs30506172 SNP Detail

Summary

• ID
  rs30506172
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101425291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTTTG ACACTCTCAA
  GGGCTGCCTC TTTTTAGTCA TGTGACCCAG GTCTAATTAT TTGGTTTCTT TGGAGATCGA
  TGTCCTCATA TGTCACAAGG GAACTATATT AGGACTTTTA TGAGATTTAT AAAGTAGGAC
  CTCTTACATG AGGGCTATGG GAATATGTCA GTATTCTTTT AAACTTGAGG GCCGGCATGC
  W
  CAAAGAAACC TGTTCTTCTA CTAAGGAGCT TCCTCAGGAC TCTTCCTACA AGTGGAGCCT
  TTTAGTTCCT TTTTCTTGTC TCAGGCCAGA GCATCTTCTA ACTTAACACC TGGTGTTAAG
  TAGTGCCTGA ATTCACTGAT GAGAAGTTAA GTGTTTGGGG CAGGGTGGTG GTGACATATG
  CCTTTAGTTC CAGCACACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45437030	mCV23083606	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss135548072	ENSMUSSNP3052399	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			A
ss320852405	CHEV_3_101321898	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30506172					SNP	T	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101425291 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Rr582066	regulatory region 582066	901 bp distal
Rr582067	regulatory region 582067	298 bp distal
Rr582068	regulatory region 582068	593 bp proximal