rs30506356 SNP Detail

Summary

• ID
  rs30506356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162397893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TCCAGTTGAA AGACTTCTCA
  R
  CGTTCCCTAC TCATCCCATG TACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44935344	mCV24523245	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss145939907	ENSMUSSNP6130389	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30506356					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162397893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	within coordinates
Rr396472	regulatory region 396472	80 bp upstream
Rr396473	regulatory region 396473	818 bp upstream
Rr421988	regulatory region 421988	within coordinates
Rr421989	regulatory region 421989	192 bp proximal
Rr421990	regulatory region 421990	270 bp proximal
Rr421991	regulatory region 421991	913 bp proximal
Tssr9715	transcription start site region 9715	273 bp upstream
Tssr9716	transcription start site region 9716	343 bp upstream
Tssr9717	transcription start site region 9717	363 bp upstream
Tssr9718	transcription start site region 9718	1304 bp upstream
Tssr14622	transcription start site region 14622	2 bp upstream
Tssr14623	transcription start site region 14623	1025 bp downstream
Tssr14624	transcription start site region 14624	1044 bp downstream
Tssr14625	transcription start site region 14625	1071 bp downstream
Tssr14626	transcription start site region 14626	1109 bp downstream
Tssr14627	transcription start site region 14627	1149 bp downstream
Tssr14628	transcription start site region 14628	1170 bp downstream
Tssr14629	transcription start site region 14629	1215 bp downstream
Vamp4	vesicle-associated membrane protein 4	191 bp upstream