rs30506467 SNP Detail

Summary

• ID
  rs30506467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54601836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTACAG TGTACTTATA
  ATAAATAAAT AATAAGTAAA TAAATAAAAT CTTTTTAAAA AACCTAATAC TATCAGATAA
  TATTTCTTTA GCCTGTACTG GCTTAAGGAG GTCCTTCCCT CCGAAAAAGT TTTGTATAGG
  AAATCTGGTT TTCTGTCACT AGAATTTGTA CTTTAACAGA GTTGTGTAGT TTCTGTGGCA
  R
  TAAGTGCAAA TTGATAGGTG AAAAATTGTA AAACAACTTA GTGTCTTCAG AGCAGAGGGT
  ATCATCTTTG GTAGGCAGGA AGGGTTAGAA CAGTGGGCTT CCACGGTGGT GTTTCCTTAT
  TTCTGGGTCC CCCACTCTAC TCTAGACTTT GACCAGAATC CAGATACTGG GACATGGGCA
  TCCATCCTAA AGCTGGGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955450	NES10811401	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30506467					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955450	NES10811401	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54601836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1228 bp distal
Gm65558	predicted gene, 65558	1754 bp upstream
Rr397672	regulatory region 397672	1553 bp downstream
Rr576829	regulatory region 576829	1793 bp distal
Rr576830	regulatory region 576830	1300 bp distal
Rr576831	regulatory region 576831	840 bp distal
Rr576832	regulatory region 576832	269 bp distal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	1615 bp downstream
Tssr29132	transcription start site region 29132	1579 bp downstream
Tssr29133	transcription start site region 29133	1547 bp downstream
Tssr29134	transcription start site region 29134	1523 bp downstream
Tssr29135	transcription start site region 29135	1360 bp downstream
Tssr29136	transcription start site region 29136	1336 bp downstream
Tssr29137	transcription start site region 29137	1314 bp downstream