rs30506469 SNP Detail

Summary

• ID
  rs30506469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54601911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAATATTT CTTTAGCCTG
  TACTGGCTTA AGGAGGTCCT TCCCTCCGAA AAAGTTTTGT ATAGGAAATC TGGTTTTCTG
  TCACTAGAAT TTGTACTTTA ACAGAGTTGT GTAGTTTCTG TGGCAGTAAG TGCAAATTGA
  TAGGTGAAAA ATTGTAAAAC AACTTAGTGT CTTCAGAGCA GAGGGTATCA TCTTTGGTAG
  R
  CAGGAAGGGT TAGAACAGTG GGCTTCCACG GTGGTGTTTC CTTATTTCTG GGTCCCCCAC
  TCTACTCTAG ACTTTGACCA GAATCCAGAT ACTGGGACAT GGGCATCCAT CCTAAAGCTG
  GGTAGGTCAC TTGGTTTGTA AGGCAGGATG AGACCCCCTG CATTATGGGA AAGATTTTTC
  AAAGATGTTT CTCCTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955452	NES10811402	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A	G	G	G	A		G	A	A	G		G
ss320772395	CHEV_3_54498412	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30506469					SNP	G	G	A	A	G	A	G	G	G	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955452	NES10811402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54601911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1303 bp distal
Gm65558	predicted gene, 65558	1829 bp upstream
Rr397672	regulatory region 397672	1628 bp downstream
Rr576829	regulatory region 576829	1868 bp distal
Rr576830	regulatory region 576830	1375 bp distal
Rr576831	regulatory region 576831	915 bp distal
Rr576832	regulatory region 576832	344 bp distal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	1690 bp downstream
Tssr29132	transcription start site region 29132	1654 bp downstream
Tssr29133	transcription start site region 29133	1622 bp downstream
Tssr29134	transcription start site region 29134	1598 bp downstream
Tssr29135	transcription start site region 29135	1435 bp downstream
Tssr29136	transcription start site region 29136	1411 bp downstream
Tssr29137	transcription start site region 29137	1389 bp downstream