rs30506471 SNP Detail

Summary

• ID
  rs30506471
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54602001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTACTTTA ACAGAGTTGT
  GTAGTTTCTG TGGCAGTAAG TGCAAATTGA TAGGTGAAAA ATTGTAAAAC AACTTAGTGT
  CTTCAGAGCA GAGGGTATCA TCTTTGGTAG GCAGGAAGGG TTAGAACAGT GGGCTTCCAC
  GGTGGTGTTT CCTTATTTCT GGGTCCCCCA CTCTACTCTA GACTTTGACC AGAATCCAGA
  K
  ACTGGGACAT GGGCATCCAT CCTAAAGCTG GGTAGGTCAC TTGGTTTGTA AGGCAGGATG
  AGACCCCCTG CATTATGGGA AAGATTTTTC AAAGATGTTT CTCCTTTTTT TAAGTAAAAG
  TATTAGAGAA GTCTGGAAAT GTAGCCTGGG GCACTTGGGG GAATAGGAGT TTTCTGGTTT
  TGCCATCAGT GTGATTAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955454	NES10811403	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	G	T	G		T	T	G	T
ss135184766	ENSMUSSNP3849720	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30506471					SNP	T	T	T	T	T	T	G	T	G	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955454	NES10811403	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54602001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1393 bp distal
Gm65558	predicted gene, 65558	1919 bp upstream
Rr397672	regulatory region 397672	1718 bp downstream
Rr576829	regulatory region 576829	1958 bp distal
Rr576830	regulatory region 576830	1465 bp distal
Rr576831	regulatory region 576831	1005 bp distal
Rr576832	regulatory region 576832	434 bp distal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	1780 bp downstream
Tssr29132	transcription start site region 29132	1744 bp downstream
Tssr29133	transcription start site region 29133	1712 bp downstream
Tssr29134	transcription start site region 29134	1688 bp downstream
Tssr29135	transcription start site region 29135	1525 bp downstream
Tssr29136	transcription start site region 29136	1501 bp downstream
Tssr29137	transcription start site region 29137	1479 bp downstream