rs30506826 SNP Detail

Summary

• ID
  rs30506826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115476036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGAAAG AAGAAGCAGG
  AAGGAGAGGA AGGAAAGGAA AGGAAAGGAA AGGAAAGGAA AGGAAAGGAA AGGAAAGGAA
  AGGAAAGGAA AGGAAAGGAA AGGAAAGGAA AGGAAAGGAA AGGAAGGAAA AGAAGAAAAG
  AGAGGGAAGA AAGGAAGAGT CGCTGTAAGC TGCGAATGAT GAACCCCTCC AGCAGTTGGG
  R
  GATGCACACC TCATACTGAA AAGAACGTCT GGGTGATATG CGGGGTCACC ACCAGGAGCA
  TTCAGCTCAT AGATGGTAAT TCAAAGCATG GATATGAATG TGATTACTAA GAAGAAAATG
  CAGACAGTAG GGAAAAGAGG AAGTAGGGTG CCAGGGGGTG CATGCTTGTA GTCTCAGTTA
  GTTGAGAGCC TGCGACTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45435379	mCV23909427	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss135664073	ENSMUSSNP84822	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320892811	CHEV_3_115385305	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30506826					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115476036 () rs orientation: forward

Symbol	Name	Function Class
Gm64341	predicted gene, 64341	264 bp downstream
Rr397954	regulatory region 397954	919 bp downstream
Rr583574	regulatory region 583574	856 bp distal
Rr583575	regulatory region 583575	within coordinates
Tssr31331	transcription start site region 31331	756 bp upstream
Tssr35267	transcription start site region 35267	294 bp downstream