rs30506857 SNP Detail

Summary

• ID
  rs30506857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122361496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAAATGCC AAAGATTTGC ATAGTATGAA GAAACACCAC
  AGTATCTTGC ATGAACTTGT ACATTTTCAG TCTTCAAGCC TTTCTGACAA GCACAACTAG
  R
  CATATTAAAT ACACACACAC ACACACACAC ACACAAAACT TTCTTCAGCA CAATTCTTAA
  AGACTACAGT TATCTATTGT AAAAAAAAAA AAAAAAATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45436934	mCV22967129	ABI	CRAMUS_MOUSE	f	SNP		A				A		G
ss51614417	NES14662940	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A	G	A	A	A	A	A	A
ss135744538	ENSMUSSNP2743068	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30506857					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51614417	NES14662940	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122361496 () rs orientation: forward

Symbol	Name	Function Class
Fnbp1l	formin binding protein 1-like	within coordinates
Gm43569	predicted gene 43569	within coordinates
Rr74164	regulatory region 74164	586 bp proximal
Rr78947	regulatory region 78947	896 bp distal
Rr375679	regulatory region 375679	1705 bp downstream
Tssr31506	transcription start site region 31506	1108 bp downstream
Tssr35455	transcription start site region 35455	938 bp downstream
Tssr35456	transcription start site region 35456	1863 bp downstream