rs30506904 SNP Detail

Summary

• ID
  rs30506904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132796774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGACCTTA AGGAATTTAT GACAAAGGAT TTGGTGGTGA
  GTATGGCGGG GGATGGAGAT GGGGTGGTGT AATTCCCCAG TCAAAGTTAG AGAGGTATGT
  R
  TTAGGGTATT CTTTTTTTTT TTTTTTTCTT TTTTAATTTA AGCCAAAGCA GTTCTCGTGC
  AAACTCAAGC TTTCTGTTCG TGCTAATAAT GGAAGGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45435780	mCV25027922	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss135916549	ENSMUSSNP2855404	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30506904					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132796774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			167 bp proximal
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Ints12	integrator complex subunit 12			842 bp upstream
Rr398028	regulatory region 398028			within coordinates
Rr398029	regulatory region 398029			744 bp upstream
Rr585500	regulatory region 585500			within coordinates
Rr585501	regulatory region 585501			802 bp proximal
Rr585502	regulatory region 585502			838 bp proximal
Rr585503	regulatory region 585503			1010 bp proximal
Rr585504	regulatory region 585504			1880 bp proximal
Tssr31768	transcription start site region 31768			814 bp upstream
Tssr31769	transcription start site region 31769			831 bp upstream
Tssr31770	transcription start site region 31770			873 bp upstream
Tssr31771	transcription start site region 31771			910 bp upstream
Tssr31772	transcription start site region 31772			1557 bp upstream
Tssr35744	transcription start site region 35744			723 bp downstream
Tssr35745	transcription start site region 35745			751 bp downstream
Tssr35746	transcription start site region 35746			785 bp downstream
Tssr35747	transcription start site region 35747			1016 bp downstream
Tssr35748	transcription start site region 35748			1032 bp downstream
Tssr35749	transcription start site region 35749			1365 bp downstream