rs30507935 SNP Detail

Summary

• ID
  rs30507935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171978575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGC CTAAGAGCCG GCTGTGGTGG
  Y
  GCACGCCTTT ATTCCCAGCA CTCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss44935491	mCV23114249	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss120006887	PARCsnp_1.17521	PARC_SEQ	INBRED	f	SNP			C	T
ss120009755	PARCsnp_1.07145	PARC_SEQ	INBRED	f	SNP			C	T
ss146182879	ENSMUSSNP3233410	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T		C
ss320122962	CHEV_1_174081139	CHEVERUD	SCREENING_POP	f	SNP					C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30507935					SNP	T	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171978575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcaf8	DDB1 and CUL4 associated factor 8			Intron
				Noncoding-Transcript-Variant
Rr372457	regulatory region 372457			1256 bp downstream
Rr423471	regulatory region 423471			1159 bp distal
Rr423472	regulatory region 423472			875 bp distal