rs30508349 SNP Detail

Summary

• ID
  rs30508349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115435040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCTCTA CCAATAAAAT
  AAATAAATAA ATAAATAAAT AAATAAAGCC TGTCACCCAG CAATCTTTTG TTAGTGTCCT
  TCCACCCCCA AATATTCCTC CCATTGTATT CTTTCTCTCT TCCTTTCTAT TAGTTGAATC
  TATTTCCTGA CAGTTTCATA CAAGTACATA GTTCATTTGG TTACTTGCAT CCCTTCCACC
  Y
  TCTCTTACTC TCCCATCCCT CCCTCTCCTC CGTACAAGTC CCTTACCAGC TCCTGGTATA
  TTGTTCTGTT TTGTGAACCA CTGATTTTAA CCAGGGCTAT CTGTGTGTCT GCAGAACTCT
  CCTCTGGAGC CTAGCTGGCT CACCTTGGGT ACACAACTGA AGACAATGAC TATCCCTTCC
  CAGAATCCAC CAGTCACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss45437049	mCV24998084	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss135663617	ENSMUSSNP3246526	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs30508349					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115435040 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	within coordinates
Rr367536	regulatory region 367536	938 bp upstream
Rr367537	regulatory region 367537	1337 bp upstream
Rr583561	regulatory region 583561	within coordinates
Rr583562	regulatory region 583562	149 bp proximal
Rr583563	regulatory region 583563	1490 bp proximal
Rr583564	regulatory region 583564	1696 bp proximal
Tssr35264	transcription start site region 35264	119 bp downstream
Tssr35265	transcription start site region 35265	152 bp downstream