rs30508690 SNP Detail

Summary

• ID
  rs30508690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54870123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCAGGTGGCC TGGGCTGGCG TGGCGCTCGG GTCCGCGGCA GCACGTCGCG GCGTACCGGC
  GGGCCGGCTG CTGGAGGAGC GGCTCCATCC GGGTTCTGCA AGGCTGTGAT GTCGAAGGCC
  TCCGTGTCCT CCTCTCCGCC ACCCTCGTCA TCATAGGTGA TGATGTTCTC GCGGACGTCC
  TCCTCCTCCA GTACCATCAA GGCTTCCTGC TTCTGCCGCC TCAGGGCCAC GAAGAGAACC
  ACCAGGGCTG CACAAGAGCA CACAGGCCAA AGAGCCAGCT GGTTCCCATG CAGGGCCAGA
  Y
  GAAAGCCAGG GCAGTGTGGC CAGAGTCTGC AAGCTCTAGG TCTGACATTT GGCAATCCTT
  TGTTTGAATC CTGCCTTTGC CCTTTATTTG CTATGTGTGA GAAATTTACG TTGAAAAAAA
  AAAAAAAAAA CTTTTATCTC TTTAGGTGTT TGAAAGATGA AAATGAAACA TCTGTGTCAT
  GCCCAGTACC ACACTTGGCA CAGAATAAGG GTTTAATCAA TTTTTATGGC TAGTTACTTT
  CATGGATTTG CAGGTCCAGT AATTATGAGG ACAGACGTTT TTCTCTTGGA CCTTAGTAGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39193069	mCV23591124	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30508690					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54870123 () rs orientation: forward

Symbol	Name	Function Class
Cdh24	cadherin-like 24	within coordinates
Cpgi6468	CpG island 6468	54 bp distal
Rr289238	regulatory region 289238	1478 bp proximal
Rr295556	regulatory region 295556	1598 bp proximal
Rr299444	regulatory region 299444	within coordinates
Tssr128611	transcription start site region 128611	377 bp upstream
Tssr128612	transcription start site region 128612	352 bp upstream