rs30509084 SNP Detail

Summary

• ID
  rs30509084
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:32971700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACAACACG TTAATGATCT ATCTTAAGAT CACCTCATAA
  AGTGATGATT TACAACGTCA GTGACTTTTC CACTGTACAC AGAGGCCTGT ATGCCAAATG
  K
  TTATAGAAGT TTGTGTAAAC AGTGGTATTA TAAGAGATTT GTGTTTTCTT TAGCTAGGAT
  TCTCAGATAT TTTATATGGT GTGCACTATT TTTGCAATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45935695	mCV25307104	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		T
ss60876557	NES15980438	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	G	T		T	T	T		T
ss133104346	ENSMUSSNP3741192	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							T
ss321780318	CHEV_6_32944765	CHEVERUD	SCREENING_POP	f	SNP													T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30509084					SNP	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876557	NES15980438	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32971700 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Gm53279	predicted gene, 53279	within coordinates
Gm66358	predicted gene, 66358	307 bp upstream
Rr140002	regulatory region 140002	1701 bp proximal
Tssr60215	transcription start site region 60215	1116 bp upstream
Tssr60216	transcription start site region 60216	302 bp upstream