rs30509364 SNP Detail

Summary

• ID
  rs30509364
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102901626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACTGCATGA GGGAACTGGC ATTTCAGTTG TGTGTCATTG TATCCCTAGG TATCACCCTA
  ACAGCCACTG CCACACTACA CAGTGTGTTC TTCAGTAGTT TTGCTTACAG TCCCAGAGTT
  CTACAATCTG CACAATCTAA CCTTAAAGCA TTTTCAGCAT CCCAAAACAC CATAGCTTCA
  TTTTGAGACC CAAAGTACTA GTCTCTCTCT TTTCTCCTCT CTTCTCTTTC ACTCTTTCAT
  CTCTCTTCTC TCTTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  M
  TCTATCTCTC TGTGTTTCTC TGCACACTTG CACATGCACC AAGTCCTTGA GACAAGACCA
  AGGGCCCAAC AGCTACAATC CAATATATAA ATGTAAGGAA TTAAGAGTTA AAGAATACCA
  GGGAGACAAG GGGGGGAAAC TAAGTGAAAT GTTAGAAACA AATAAACTAG CCTGTTCACA
  GTTGGGTATT CTCATGCACG GTGGCTGGGA GCATCAGGAG AGGCCCCTCC CTTCTCACCT
  GAGACTTATA CTGCTGGCAA CCGAAAACTT GTCCCCACTT CAGCCCTTCC TAATGTCCTA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45437055	mCV23377293	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30509364					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102901626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13629	CpG island 13629	1234 bp proximal
Rr397897	regulatory region 397897	1206 bp upstream
Rr582292	regulatory region 582292	1048 bp distal
Rr582293	regulatory region 582293	908 bp proximal
Sike1	suppressor of IKBKE 1	1430 bp upstream
Tssr30945	transcription start site region 30945	1399 bp upstream
Tssr30946	transcription start site region 30946	1489 bp upstream
Tssr30947	transcription start site region 30947	1813 bp upstream