rs30509411 SNP Detail

Summary

• ID
  rs30509411
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78636146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGGGCC GTGGCGAGGG
  TCGGGGAAAC GGGGGTTGGT GGAGGGTGAG TGGCGAGTAG GGCGTCCTCG CGGATTCGGG
  GAAACCGCCG GCGTGGAGCT GCGGGCGCGG GAGGAAGGAT GCACCGCGGC CTCCTCCGCG
  GGCGCGGGCA CGTGGGTGGG GTCGTCCCGC TCCACGCGGC CGCGCGGCGT CCGTGGGAGG
  W
  ACCAGCGCCC AGAGGGTCCC TGAAAACTGC GGGTGTGGGA CAGGAAATGC GGGTGCGGGC
  GGTGGGAATG GCGTGGGGAA CCTCTGGTGT CTCCTCCTAA GTGCGTTTTA GTCTCGGACG
  AGTCAGTCAT GAGATGCATA CATAGGCAGC CCCGGGGGTC ACTTGTGATC CCCGTGATGG
  GATTTCACAG ATGAAGATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss44935417	mCV22632338	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss144751902	ENSMUSSNP5383908	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30509411					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78636146 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	within coordinates
Cpgi461	CpG island 461	within coordinates
Rr17618	regulatory region 17618	1546 bp distal
Rr29694	regulatory region 29694	within coordinates
Rr396121	regulatory region 396121	431 bp downstream
Tssr7581	transcription start site region 7581	561 bp downstream
Tssr7582	transcription start site region 7582	540 bp downstream
Tssr12428	transcription start site region 12428	147 bp upstream
Tssr12429	transcription start site region 12429	120 bp upstream
Utp14b	UTP14B small subunit processome component	within coordinates