rs30509961 SNP Detail

Summary

• ID
  rs30509961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146439230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATC ATACTCTCAA GGCCTATCTG
  Y
  GCTACAGAAT GAATCCATGG CTAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45935614	mCV24946854	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss322080821	CHEV_6_146486254	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs30509961					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146439230 () rs orientation: forward

Symbol	Name	Function Class
Rr134091	regulatory region 134091	1371 bp proximal
Rr139420	regulatory region 139420	within coordinates
Rr400056	regulatory region 400056	503 bp upstream