rs30510156 SNP Detail

Summary

• ID
  rs30510156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107377428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCAGCT TCCGAATCCT
  CACAGGCCGC TCTGAGGCAG CCTTCCTCCC AGAGGAGCCT TGAAAGGTGG TCAGGGACAG
  TGCCATAGAT TGTATCTCCC TTGGAGCCTA AGACCAGAGG CTTTCCGCTG CCCAGAACTG
  CCTGTGCCAC TCCCCTGAAC AGGCTGGGGG AAGTTAGGGA AAGGTTCCCA AGGTGTCTCC
  R
  CATGATGTGC ACACCAGCGG CTGTGCTTGT ACAACAAGGA GAGTGAGTGG CAGCCAGAGA
  GGGCAGTGAG TTTACCTGTC TTTCCTTAGA AACAAGGGCT CCTGGTGACA CACCTCTGAC
  CTCCAGGAAC CCTCAATCCA GGGGAGAAGC TGCCACTAAG GAGAAGATGG GGCTCCAGGT
  GAGGTGCGCT TGTTTCTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45437469	mCV24920052	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss46855953	NES10709940	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30510156					SNP	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855953	NES10709940	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107377428 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103			356 bp distal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant