rs30510176 SNP Detail

Summary

• ID
  rs30510176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90715173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC AAGGTGTGAG TCTTACCCTC
  Y
  CCCAAACCTA GTTATAGCTT TTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45936007	mCV22369304	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss133379020	ENSMUSSNP2488726	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321852509	CHEV_6_90688185	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30510176					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90715173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17726	CpG island 17726	691 bp distal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr399763	regulatory region 399763	153 bp downstream
Rr634305	regulatory region 634305	1881 bp distal
Rr634306	regulatory region 634306	608 bp distal
Rr634307	regulatory region 634307	560 bp distal
Tssr62040	transcription start site region 62040	1414 bp upstream
Tssr62041	transcription start site region 62041	1374 bp upstream