rs30510316 SNP Detail

Summary

• ID
  rs30510316
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117661317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA GGAGAGTATG TATGCACGCA
  M
  AGGTATGAGT GCATAAACAC ACACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45437858	mCV24018922	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss135694714	ENSMUSSNP2988232	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
ss320900607	CHEV_3_117570586	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30510316					SNP	C	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117661317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	832 bp proximal
Gm56798	predicted gene, 56798	1349 bp upstream
Rr583873	regulatory region 583873	1602 bp distal
Rr583874	regulatory region 583874	374 bp distal
Rr583875	regulatory region 583875	1258 bp proximal
Rr583876	regulatory region 583876	1508 bp proximal
Rr583877	regulatory region 583877	1522 bp proximal
Snx7	sorting nexin 7	Intron
Tssr31404	transcription start site region 31404	1352 bp upstream
Tssr35382	transcription start site region 35382	1237 bp downstream
Tssr35383	transcription start site region 35383	1262 bp downstream