rs30511676 SNP Detail

Summary

• ID
  rs30511676
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54598227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGCTTT ACATCTCAGT
  GTCTAGAACA TCTGACCACA TACTTACGGA CTGGAAGCCA CGTGCCAGTT TCTGGACTAT
  CTCAGGCCCT GGTGACAGTC CATAGGCCTT GGCTGGCAGG ACCCTGCCTA CGAGAGGGGG
  AAAGCTGCCA ACACCCATCA CCAAGGCCTC CAGGCAGTCT TCAATCCAGT CTAAGCCCTT
  W
  TACATGCTGG TAGTACTGTG ACTCCTCTCT CCTAGCCTTC ACTTCACACT GAGAAGAATG
  CCTTGAATTC AGTGATAAGG ACCGGCTACA GAGAGGCAAG ACTTAGGGAG CAGGGGAGAA
  AATGAAACTC AAGAAAATAG CATGTAGCCA GGTTAGAGCT AGGAAGCCAA GCCTTCAACC
  ACAAAACTGA GACACACAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955416	NES10811688	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30511676					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955416	NES10811688	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54598227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1543 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	1756 bp upstream
Rr576827	regulatory region 576827	1427 bp distal
Rr576828	regulatory region 576828	1505 bp distal
Rr576829	regulatory region 576829	1223 bp proximal
Rr576830	regulatory region 576830	1817 bp proximal
Tssr29131	transcription start site region 29131	1969 bp upstream
Tssr29132	transcription start site region 29132	1999 bp upstream