rs30511678 SNP Detail

Summary

• ID
  rs30511678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54598286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGCCAGT TTCTGGACTA
  TCTCAGGCCC TGGTGACAGT CCATAGGCCT TGGCTGGCAG GACCCTGCCT ACGAGAGGGG
  GAAAGCTGCC AACACCCATC ACCAAGGCCT CCAGGCAGTC TTCAATCCAG TCTAAGCCCT
  TATACATGCT GGTAGTACTG TGACTCCTCT CTCCTAGCCT TCACTTCACA CTGAGAAGAA
  Y
  GCCTTGAATT CAGTGATAAG GACCGGCTAC AGAGAGGCAA GACTTAGGGA GCAGGGGAGA
  AAATGAAACT CAAGAAAATA GCATGTAGCC AGGTTAGAGC TAGGAAGCCA AGCCTTCAAC
  CACAAAACTG AGACACACAA ATGTGGGGGC ACTCAGGACA TCAAGATCCC TGACAGTGAC
  TGGCATCACT AGCACTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955418	NES10811694	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30511678					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955418	NES10811694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54598286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1484 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	1697 bp upstream
Rr576827	regulatory region 576827	1486 bp distal
Rr576828	regulatory region 576828	1564 bp distal
Rr576829	regulatory region 576829	1164 bp proximal
Rr576830	regulatory region 576830	1758 bp proximal
Supt20	SPT20 SAGA complex component	1942 bp upstream
Tssr29131	transcription start site region 29131	1910 bp upstream
Tssr29132	transcription start site region 29132	1940 bp upstream
Tssr29133	transcription start site region 29133	1984 bp upstream