rs30511680 SNP Detail

Summary

• ID
  rs30511680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54598546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGAAAC TCAAGAAAAT
  AGCATGTAGC CAGGTTAGAG CTAGGAAGCC AAGCCTTCAA CCACAAAACT GAGACACACA
  AATGTGGGGG CACTCAGGAC ATCAAGATCC CTGACAGTGA CTGGCATCAC TAGCACTCTG
  AGGGCCAGAG AGGGTGGGCC TCTGCTGGAA CAGCTTTCTG TCTGATACTG TCTGATATTG
  R
  TGTTTTAAAA CTCAGTGTAG GGTTAGTTGT GGTAGTCTGC ACTAATCTCA GCTCTCAGGA
  GCCAGAGGTA GATCAATTTC TGCCGTTTTA AAAACCAACC TGGTCTTTAT AACAAGTTTC
  AGGTCAGCCA GAGCAATAAT AATAACAATA ACAACAACAG CAGCAGCCAG GACCTGTGCT
  GGAGCCTTGC TCTATCCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955420	NES10811697	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30511680					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955420	NES10811697	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54598546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1224 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	1437 bp upstream
Rr576827	regulatory region 576827	1746 bp distal
Rr576828	regulatory region 576828	1824 bp distal
Rr576829	regulatory region 576829	904 bp proximal
Rr576830	regulatory region 576830	1498 bp proximal
Rr576831	regulatory region 576831	1991 bp proximal
Supt20	SPT20 SAGA complex component	1682 bp upstream
Tssr29131	transcription start site region 29131	1650 bp upstream
Tssr29132	transcription start site region 29132	1680 bp upstream
Tssr29133	transcription start site region 29133	1724 bp upstream
Tssr29134	transcription start site region 29134	1758 bp upstream
Tssr29135	transcription start site region 29135	1909 bp upstream
Tssr29136	transcription start site region 29136	1934 bp upstream
Tssr29137	transcription start site region 29137	1963 bp upstream