rs30512255 SNP Detail

Summary

• ID
  rs30512255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127201879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAGATG CTGGAGAGCT
  GAGGCTCATG CCTGAGGCAC GAGTGCAGCT CTGCACTCCT GTCATCCATA AAACAGGAAA
  CAAAACAACA GTGCTTAGAA ATCTTCACTT CTCCCTCTGC TGCACCTTAG TTGGGCTTTG
  GAAGCAGAAA AGAGAATCCG TTTGCTGGGA AACAGAGTGA GAACTCCATC ATTTTTCCTC
  Y
  GCTGTCTGTG TTCTGCCAGC TGACGGTACC TAGTGCAAAA TTTAACCATT AAAGGGGGGC
  AATCTCCTAG CAACCCCACT GTTGGGCAAA ACTAATCAAG TGTCCACACT ACGGCTTCAC
  CCTGCCTCTC CTCTTATCAC CTACTCCCCC AGAACAGGGA AGGGTGGCAA CCACTACATG
  GTCCTTTGGC ACAAACACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45438141	mCV23997510	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss135862632	ENSMUSSNP4282342	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T		C
ss320953854	CHEV_3_127111148	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30512255					SNP	C	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127201879 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	457 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	932 bp distal
Rr584773	regulatory region 584773	within coordinates
Rr584774	regulatory region 584774	727 bp proximal
Tssr35571	transcription start site region 35571	650 bp downstream
Tssr35572	transcription start site region 35572	707 bp downstream
Tssr35573	transcription start site region 35573	756 bp downstream
Tssr35574	transcription start site region 35574	784 bp downstream
Tssr35575	transcription start site region 35575	814 bp downstream