rs30512543 SNP Detail

Summary

• ID
  rs30512543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:139438231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACGTCCAC ACACAAAATT AATGAATAAA CGAGAGCTTT
  CTTCTACTAT CTCAAATGTC TTTGTCCTCC TTTGGTGTGG AATAAATGGT ACAATTCATT
  Y
  TTCTACAACT CCTTCCTTGG AATCACCTTA GAAAAAGTTC ACTGACAAAA CATCGCCCTC
  TCGTGGAAGG TTTTAATAGC ACCTTCAAAA GAACCACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45934959	mCV24083668	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss133916382	ENSMUSSNP1545123	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322019567	CHEV_6_139409754	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30512543					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:139438231 () rs orientation: forward

Symbol	Name	Function Class
Rr640348	regulatory region 640348	50 bp proximal