rs30512778 SNP Detail

Summary

• ID
  rs30512778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121136919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAA ACACTCAAGG CTTTGGTACG
  Y
  AGAGTTTCCC GTTCCTGGAG AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45437956	mCV27562821	ABI	CRAMUS_MOUSE	f	SNP	C		T
ss135718865	ENSMUSSNP4814788	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320903095	CHEV_3_121046188	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30512778					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121136919 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	1683 bp upstream
Gm66111	predicted gene, 66111	within coordinates
Rr367544	regulatory region 367544	1750 bp upstream
Tssr35413	transcription start site region 35413	57 bp downstream
Tssr35414	transcription start site region 35414	86 bp downstream