rs30513177 SNP Detail

Summary

• ID
  rs30513177
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42110733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATCAATGCA AATGTATGAA TAACAAATCC AGTTCTGACC TCTCTGTCCA GTTTCCTTTG
  GGGGAAGAAA GACAAGATAA ATGCAGTTTT AAGGACAAAG ACACATTTCT GTGGAGTTAT
  GGGGACTTGA CTCTTGAAAA CCAAGTGTTT TCTTAAGACA TTTCAAAAAC TGACATGAGT
  CTGCATTGAT AAAACACATA CTTGCTTTTG GTATGAATAT TTACTATAGT GTTTGCCCTG
  GCTACTTCCT TACAGTCAGA ATTCTGGGAT TAGGTATAGA GCAGTGGGTT GCAACCCTTT
  K
  GGGGGGGGGC GTTGAATAAC CATTTCACAG GAGTCTCCTA AGACCATCGG GAAACAGATA
  TTTACATTAT GATTTATAAC AGTAGCAAAA TTAGTTTTGA AATACGAACA AAGTAATTTG
  TTGGGGGTCA CCACAACATG AGTAGAACTG TATTAAAGAG TCGCAGCATT AGGAAAGTTG
  AGAGCCACTG GTTTAGATGC AAATTTAGGA GAGGTTGGCT TTTATCCATG GCCATCAGAG
  GGCAGTCCTG CCGTATAGGA TCATCACTGT TCCTGGGGGA TGGGGGTTGG CAAGGAGAGG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss44936492	mCV24954857	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30513177					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42110733 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	981 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	207 bp downstream
Rr547821	regulatory region 547821	1511 bp distal
Rr547822	regulatory region 547822	232 bp proximal