rs30513237 SNP Detail

Summary

• ID
  rs30513237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17464478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTATGG GGTCGGGGAG
  GTGCAAACTA GAATTGAGCT TGTCGCTTTA GAAGGAGTGT TGTTGACGGC CACCTGTGTG
  ACTCAGGGGC GCCAAGAGCA TTAGGTGCTC CAGGGCTGCT GTAGCTCTGC AAGTTTCACC
  TCTGGGATCT GACTCAGCCC TTACAGAAGG GATCGGTCAC CCTGTCCAGG GTGATACAGC
  Y
  GGCAAGGTTT GAGCCCAGCT ATTTCCTTGT TCCTAGTCTT GCTTTATCTG CCTTGAGGGA
  GCGCGCGAGG AGGGGGTGGG GGTGTCTTTC TCAAGGGCAG GTGTTTCTGG GATGGTCTGA
  ATTTTTTATT CCTGGCAAAC ACACGGAGGG TGTGATCCAT CATTTTCTAT CCCACTTTAT
  CTTTTTTTTT TCCTGGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45937118	mCV23977987	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss133014999	ENSMUSSNP698166	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30513237					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17464478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	within coordinates
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	431 bp distal
Rr626800	regulatory region 626800	984 bp distal
Rr626801	regulatory region 626801	941 bp distal
Rr626802	regulatory region 626802	within coordinates
Tssr55050	transcription start site region 55050	1037 bp downstream
Tssr55051	transcription start site region 55051	898 bp downstream
Tssr55052	transcription start site region 55052	670 bp downstream
Tssr55053	transcription start site region 55053	650 bp downstream
Tssr55054	transcription start site region 55054	581 bp downstream
Tssr55055	transcription start site region 55055	573 bp downstream
Tssr55056	transcription start site region 55056	408 bp downstream
Tssr55057	transcription start site region 55057	366 bp downstream
Tssr55058	transcription start site region 55058	330 bp downstream
Tssr55059	transcription start site region 55059	305 bp downstream