rs30513394 SNP Detail

Summary

• ID
  rs30513394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146167062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTGGGT GGTGCCATCT
  CTGTGCTGGT AGTCTTGGGT TCTATAAGAG AGCAGGCTGA GCAAGCCAGG GGAAGCAAGC
  CAGTAAAGAA CATCCCTCCA TGGCCTCTGC ATCAGCTCCT GCTTCCTGAC CTGCTTGAGT
  TCCAGTCCTG ACTTCCTTTG GTGATGAACA GCAGTGTGGA AGTGTAAGCT GAATAAACCC
  Y
  TTCCTCCCCA TCTTACATCT TGGTCATGAT GTTTGTGCAG GAATAGAAAC CCCGACTAAG
  ACAGTATGTA TATCTAATAT ATATTAAGCA ATATTTCTAG AGCTCTGTTT TGAGAACTGT
  TAACATTATA TATAGACAAA CACATATATG TGCAAATATG CATGCATGTG CTATGACCAA
  ATATATTTAG AAAACAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45438255	mCV24074678	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss136044672	ENSMUSSNP75270	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321010483	CHEV_3_146124271	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30513394					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146167062 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	1980 bp distal
Spata1	spermatogenesis associated 1	Intron