rs30513723 SNP Detail

Summary

• ID
  rs30513723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134581863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTGCAGC TCTCTAAGCT GTGTTTTTCT CACCCTTTAC
  AACATATAAT TAGGATCAAA TGGGGTGGAA GGAGAACGCA CTCTAGCCAC AGATGGCAAA
  Y
  GATAAATGGC TCTAACAGAT GAAACGCGTT GTAAGATGAC TGCCAACCTT CCAGACACTT
  TTCAGATTGC CAGGTAGAAA AGGTAGCCAC ATGAAAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45937994	mCV24123664	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss321980818	CHEV_6_134554918	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30513723					SNP	C	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134581863 () rs orientation: forward

Symbol	Name	Function Class
Gm38910	predicted gene, 38910	334 bp downstream
Rr133397	regulatory region 133397	663 bp distal
Rr147832	regulatory region 147832	1064 bp distal
Rr147833	regulatory region 147833	1139 bp proximal
Tssr59244	transcription start site region 59244	870 bp upstream