rs30515330 SNP Detail

Summary

• ID
  rs30515330
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71249819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA ACACTACCTC AGGAAAAAAA
  M
  CAAAAATGGC CTGGGACCGG GCAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45936167	mCV22369514	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss133274957	ENSMUSSNP4630963	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss321817335	CHEV_6_71222829	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30515330					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71249819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	517 bp distal
Krcc1	lysine-rich coiled-coil 1	within coordinates
Mir8112	microRNA 8112	1034 bp downstream
Rr146429	regulatory region 146429	within coordinates
Rr379580	regulatory region 379580	269 bp downstream
Tssr56988	transcription start site region 56988	1906 bp downstream
Tssr56989	transcription start site region 56989	1229 bp downstream
Tssr56990	transcription start site region 56990	1092 bp downstream
Tssr61350	transcription start site region 61350	1323 bp upstream