rs30515407 SNP Detail

Summary

• ID
  rs30515407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146790925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTA GTCAGGGACA TGCGCACAGT
  Y
  TTACACAGTG GGTATCTCAC CACGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45935766	mCV22760953	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss322083558	CHEV_6_146837949	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30515407					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146790925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18173	CpG island 18173	279 bp distal
Gm66444	predicted gene, 66444	715 bp upstream
Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	within coordinates
Rr145955	regulatory region 145955	within coordinates
Tssr59600	transcription start site region 59600	839 bp downstream
Tssr59601	transcription start site region 59601	822 bp downstream
Tssr59602	transcription start site region 59602	773 bp downstream