rs30516287 SNP Detail

Summary

• ID
  rs30516287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48652409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA CAACTCCTCC CATACCTCAC
  Y
  ACACCTTCCA TAGAGCATAT CCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45938120	mCV23169302	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss133165802	ENSMUSSNP5570135	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321794341	CHEV_6_48625474	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30516287					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48652409 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	675 bp upstream
Gm46958	predicted gene, 46958	357 bp downstream
Rr629719	regulatory region 629719	201 bp distal
Rr629720	regulatory region 629720	173 bp proximal
Tssr56160	transcription start site region 56160	642 bp downstream
Tssr56161	transcription start site region 56161	266 bp downstream
Tssr56162	transcription start site region 56162	639 bp upstream
Tssr56163	transcription start site region 56163	685 bp upstream
Tssr56164	transcription start site region 56164	718 bp upstream
Tssr56165	transcription start site region 56165	933 bp upstream