GGCAGAGGGA AAAGTTTGTT CTCCCATTTT GAATACTGAG CCAGACAGAA AGAGAGGACA AGAAACTTTT TAAGAGTGAA AATAAACTCA AGAGGCGAGC TTACCTTAAC ATGGAGGGAG CCATTTTTCA GAGTTTTGAG AACTTGTGGT TTGGACACTT CTGGACCTAA AATTGACACT TTGAATGACC AGGCAGCACA S GTAGCCTGCA AAAGAGTCAA ATGGAGTCCA GCGTTAGTGA GATTATATGT TATGTGGTAT ATAATGTTGG ATGTCAACTC CCCAAAACCA TAAAACTTAC TTTAATGGCC CCACGTGACG TTTTATAGCC AGTGAGGCGA TCTGTCTGTG CTATGGATGA TTTTACGATC TAATTCATAG ACAAAACCCT ATTCATTTGG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45935983 | mCV22669682 | ABI | CRAMUS_MOUSE | f | SNP | G | C | C | ||||||||||||||
ss60886895 | NES15971109 | PERLEGEN | MM_PANEL2 | f | SNP | G | C | G | C | G | C | C | C | C | G | C | C | G | C | G | ||
ss133191023 | ENSMUSSNP697041 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | C | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30516590 | SNP | G | G | C | G | C | G | C | C | C | C | C | G | C | C | G | C | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60886895 | NES15971109 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr6:52177913 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi17422 | CpG island 17422 | 298 bp distal | ||||||
Gm28308 | predicted gene 28308 | within coordinates | ||||||
Hoxa3 | homeobox A3 | within coordinates | ||||||
Hoxa5 | homeobox A5 | 855 bp downstream | ||||||
Hoxaas3 | Hoxa cluster antisense RNA 3 | 191 bp upstream | ||||||
Tssr56510 | transcription start site region 56510 | 265 bp upstream | ||||||
Tssr60990 | transcription start site region 60990 | 13 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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